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The cpPredictor server generates secondary structure of query sequence(s) using structural template(s). Templates are RNA secondary structures, either experimentally identified or predicted. FASTA format for sequences and dot-bracket format for the template structures are accepted on input. Biological reliability of the generated structures is evaluated in form of z-scores.
Information on how the prediction algorithm works can be found
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Citation: Panek, J., Modrak, M. and Schwarz, M. (2017) An Algorithm for Template-Based Prediction of Secondary Structures of Individual RNA Sequences, Front Genet, 8, 147.
Query sequence(s) file
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from 10 samples (quick)
from 100 samples (more accurate)
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The results will be available for one week at
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